Activity Report

Relatório compartilhado

OCL | CIEL | Madiro contract

2026-02-01 - 2026-07-31

Horas trabalhadas

511h

Dias ativos

116

Atividades

182

Média por dia ativo

4:24:18

Horas por

2026-02-01 - 2026-07-31

182 activities

OCL | CIEL | Madiro contract · 2026-02-01 - 2026-07-31 · Page 2 of 4

DateDayStartEndDurationDescription
05/21/2026Thu08:22:5619:16:3910:53:43Restoring the ICD-11 Agent and ICD API using the new ICD-11 v2026-01 release; VPS configuration and infrastructure setup; configuring the CIEL Lab environment; resumed CIEL Lab development activities; alignment meeting regarding short-term expectations around Mapper, Geneva meetings, and Rotterdam discussions; implementing actions from the meeting including cleanup of the lookup repository (`IsLeaf` corrections and `Unknown` descriptions updates), updating ICD external match APIs to ICD-11 v2026-01, creating `Is Leaf` as a property in the ICD-11 lookup source, injecting non-normalized ICD-11 codes into the lookup to improve automatch compatibility with the evaluation dataset ([https://openmrs.slack.com/archives/C0A99PV25NG/p1779364624293559?thread_ts=1779361813.753039&cid=C0A99PV25NG](https://openmrs.slack.com/archives/C0A99PV25NG/p1779364624293559?thread_ts=1779361813.753039&cid=C0A99PV25NG)), and creating scripts for ICD-11 concept corrections in CIEL with candidate review workflows
05/20/2026Wed13:49:3914:58:181:08:39Troubleshooting issues related to the ICD-11 Lookup integration in OCL Mapper; updated the lookup source and identified a URL encoding issue in the mapper; infrastructure updates in CIEL Lab and the new VPS focused on observability and component isolation to better leverage the infrastructure
05/20/2026Wed08:07:3812:00:003:52:22Troubleshooting issues related to the ICD-11 Lookup integration in OCL Mapper; updated the lookup source and identified a URL encoding issue in the mapper; infrastructure updates in CIEL Lab and the new VPS focused on observability and component isolation to better leverage the infrastructure
05/18/2026Mon15:52:4817:19:241:26:36Setup new VPS environment for CIEL Lab latest release and ICD 11 Agent new environmet using Langfuse for metrics
05/18/2026Mon08:16:4911:30:003:13:11Sprint Kickoff OCL meeting; DBMI meeting; started configuration of a new production environment for CIEL Lab with improved logging and observability support for Langfuse
05/16/2026Sat18:16:0020:05:001:49:00Reviewing slides and the DBMI presentation script; implementing fixes in CIEL Lab, including improvements to error handling and propagation of errors returned by the OCL API; submitting updates to the OCL API GraphQL functionality pull request.
05/15/2026Fri08:08:5115:49:497:40:58Progressing on ICD-11 Agent trace development; participated in the CIEL meeting discussing OCL Mapper topics; performed troubleshooting of OCL Mapper with CIEL Bridge and ICD-11 for Monday’s DBMI presentation; finalized slides and speech script for the DBMI presentation; meeting with Jon to replicate the demo with Jussara; created GitHub tickets to document pending issues and technical gaps
05/14/2026Thu17:23:4319:14:201:50:37Developing the DBMI presentation; planning improvements for the ICD Agent; refactoring the ICD-11 lookup workflow to use bulk import processing
05/14/2026Thu13:57:4515:52:001:54:15Developing the DBMI presentation; planning improvements for the ICD Agent; refactoring the ICD-11 lookup workflow to use bulk import processing
05/14/2026Thu08:03:0712:43:004:39:53Developing additional slides for the DBMI presentation; participating in the internal Thursday OCL meeting and performing tests/demo showcase activities; finalized the temporary CIEL lookup source in the ICD-11-WHO-Mapper source; creating tickets to document technical debt and functional gaps identified in the system
05/13/2026Wed22:10:4100:04:361:53:55Resuming development of the presentation to better structure the script and align with the meeting held earlier today; attempting to continue sending ICD-11 codes, however HTTP 429 throttling errors persist, notifying Sunny; preparing a report for Ian Batcher for Slack communication; cleaning and recovering the CIEL Lab server environment to restore functionality
05/13/2026Wed14:13:3816:30:002:16:22Meeting with Andrew to define the DBMI presentation approach; developing slide presentation materials; attempting OCL Mapper tests for the HL7 Brazil presentation
05/13/2026Wed08:15:0312:29:384:14:35Clockify: Inserindo codigos ICD-11 mapeados do CIEL para o lookup repo atual como um quick-win /orgs/OpenMRS-OCL-Squad/sources/ICD-11-WHO-Mapper/; Realizadas correções para funcionamento do changelog https://github.com/OpenConceptLab/ocl_issues/issues/2325 ; Teste OCL Mapper para validacao de https://github.com/OpenConceptLab/ocl_issues/issues/2510
05/11/2026Mon08:13:1211:33:263:20:14Deploying the latest CIEL Lab version with improvements to https://ciellab.filipelopes.med.br/qa/bulk-validation and the new Display Issues page functionality; reporting bugs, creating issues, and coordinating with HL7 Brazil to address OCL blockers affecting the workflow
05/09/2026Sat16:19:0022:42:006:23:00Finalized creation of the CIEL Bridge ICD-11 Lookup Source for Mapper https://app.openconceptlab.org/#/orgs/OpenMRS-OCL-Squad/sources/ICD-11-CIEL-Bridge-5/versions; developed the new Display Issues page without dependency on CIELAdmin; released a stable version of CIEL Lab within the current CIELAdmin workflow to begin development of the fully OCL-native CIEL Lab workflow; implemented fixes for slow authentication issues in CIEL Lab; performed troubleshooting, recorded a demonstration video for HL7 Brazil (Jussara), and reported/discussed mapper-related bugs on Slack
05/08/2026Fri09:54:3017:03:277:08:57Meeting with Andy to discuss the direction of CIEL Lab QA Bulk Validation and the new worklist-based workflow; improving worklists and developing the new display issues page; attempted to record a video for HL7 Brazil, but a mapper bug (scispacy unavailable) prevented it https://github.com/OpenConceptLab/ocl_issues/issues/2510; final steps toward creation of the ICD-11 Lookup repository, also discussed during the meeting; refining incorrect QA rules in CIEL Lab
05/07/2026Thu17:20:0618:30:001:09:54Designing the architecture for the new /qa/display-issues model based on the QA Bulk Validation report; adding worklist functionality for QA Bulk Validation reports; generating a report of concepts with datatype inconsistencies (CIEL concepts containing Q-AND-A mappings while using non-Coded datatypes)
05/07/2026Thu14:54:3916:00:001:05:21Continuing work on generating worklists from the QA Bulk Validation report (CIEL Lab) while identifying issues along the way that need correction; for example, some CIEL concepts require review because they are ConvSet concepts but technically behave as Questions due to Q-and-A mappings existing in the same concept, while still using datatype N/A instead of Coded; issue reported to Andy
05/07/2026Thu08:58:3012:41:083:42:38Created and submitted PRs https://github.com/OpenConceptLab/oclapi2/pull/867, https://github.com/OpenConceptLab/oclweb2/pull/31, https://github.com/OpenConceptLab/oclweb2/pull/33, and https://github.com/OpenConceptLab/oclweb2/pull/34 for process improvements, performance optimization, and changelog visualization support in the frontend; attended presentation meeting with Joe covering estimated roadmap progress already achieved; discussed approaches to address findings from QA Bulk Validation; started implementing a solution; pending migration of casing issue batches into /qa/display-issues in CIEL Lab
05/06/2026Wed15:06:0119:26:134:20:12Executing QA Bulk Validation against the latest production-aligned CIEL version in CIEL Lab, identifying remaining diagnosis casing issues and publishing the interactive validation report for review https://ciellab.filipelopes.med.br/qa/bulk-validation https://app.staging.openconceptlab.org/#/orgs/CIEL/sources/CIEL/versions; implementing changelog access through the v2 interface and integrating the new changelog viewer workflow in OCL; investigating duplicated CIEL mappings in OCL HEAD and production as requested by Burke and Sunny, identifying ~25k staging duplicated pairs (code|map_type|source) mostly composed of one active and one retired mapping, with only one triple-duplication case (CA05.2&XE3GX) involving ocladmin, Joe, and my user; validating that production currently contains ~70 duplicated mapping pairs for comparison and structural impact analysis; continuing bulk import of indexed ICD-11 postcoordinated terms into the local ICD-11 Lookup Source and identifying potential optimization needs in oclapi2 for large unordered JSON import workflows
05/06/2026Wed10:08:4112:27:172:18:36Creating the second part of the lookup repository for indexed WHO ICD-11 postcoordinated items; fixing the SNOMED concept lookup location by using the local database instead of CIELAdmin analytics, reducing processing time from 7h to 2min; fixing and executing the script for duplicated mapping evaluation, awaiting results in approximately 2h
05/05/2026Tue04:47:5605:18:000:30:04PR review https://github.com/OpenConceptLab/oclapi2/pull/865; sending preliminary QA results to Andrew
05/04/2026Mon19:33:5021:24:571:51:07Searching for repeated retired mappings in the export file to assess the impact of multiple retired source|code|map_type mappings (ref: https://app.staging.openconceptlab.org/#/orgs/CIEL/sources/CIEL/concepts/149712); drafting the DBMI presentation; adjusting staging HEAD to create a production-like version for QA bulk validation; running bulk validation in production for comparison and insights
05/04/2026Mon16:33:3818:30:001:56:22Searching for repeated retired mappings in the export file to assess the impact of multiple retired source|code|map_type mappings (ref: https://app.staging.openconceptlab.org/#/orgs/CIEL/sources/CIEL/concepts/149712); drafting the DBMI presentation; adjusting staging HEAD to create a production-like version for QA bulk validation; running bulk validation in production for comparison and insights
05/04/2026Mon08:22:4911:09:002:46:11Participating in the planning meeting for the next 15 days; drafting and commenting on DBMI presentation materials in docs and creating a preliminary slide deck
05/01/2026Fri10:01:4612:19:082:17:22Preparing the accounting report and communicating overtime hours for the past months to Andrew, as suggested by Joe (PM); attending the CIEL content management meeting on ICD-11 licensing and OpenMRS DrugForm > DrugRoute forms, and how to use CIEL as a foundation for consistency in these forms
04/30/2026Thu09:09:2212:13:293:04:07Attending the weekly OCL Showcase meeting, including Joe’s presentation on UI work with collections, and presenting at the OpenMRS Virtual Showcase
04/28/2026Tue09:00:0010:04:001:04:00Deep dive meeting: Add concept name retired flag on OCL Model Data. ICD-11 licensing, do not distribute mappings related to it in CIEL
04/27/2026Mon00:00:0203:04:593:04:57Maintaining reports and communications up to date for upcoming team demands, as I will be less available this week; completing final requested adjustments for the OpenMRS Virtual Showcase video; fixing bugs and improving CIEL Lab related to evaluation of retired ICD-11 codes
04/26/2026Sun14:04:0015:22:541:18:54Creating an alternative ending for the OpenMRS Virtual Showcase video; updating scripts and sending new reports of potential ICD-11 codes from the latest version to Andrew for CIEL
04/25/2026Sat21:30:0004:09:556:39:55Creating video content and post-production in Final Cut Pro; consolidating and sending the requested report using the updated script for CIEL term searches similar to the descriptions of ICD-11 codes newly added in version 2026-01.
04/25/2026Sat10:05:2714:08:004:02:33Meeting with Andrew to align on narrative boundaries and refine the presentation content for recording; improving the script and slides with Andy’s edits; pending: initial video edit later tonight
04/25/2026Sat01:40:4702:50:401:09:53Updating the initial presentation for the video; creating an ad hoc script to assess the usability of newly added ICD-11 codes for CIEL concepts; fixing error severity levels and improving filters in the CIEL Lab QA Bulk Validation report
04/24/2026Fri23:01:5601:03:202:01:24Creating the base presentation for the video — April 2026 OpenMRS Community Virtual Showcase https://docs.google.com/presentation/d/1cKZXLNLbyup-j4tNSyjTKOip6b8GJ14MXqeVuoI5eLU/edit
04/24/2026Fri11:07:0011:58:000:51:00Meeting with Andrew for CIEL Content to discuss the direction of the OpenMRS Showcase presentation covering OCL Mapper, CIEL, LOINC, and OpenMRS
04/23/2026Thu20:37:3500:00:123:22:37Finalizing the changelog PR https://github.com/OpenConceptLab/oclapi2/pull/859; completing and testing the dump script and submitting it for review; vectorizing ICD-11 version 2026-01 and adapting the agent to use the latest version locally https://github.com/OpenConceptLab/ocl_issues/issues/2484; loading the latest version as a release in CIEL Lab to check for retired codes and verify whether any are still in use
04/23/2026Thu15:25:4918:00:002:34:11Creating a local ICD-11 repository to test hierarchy import features; implementing a local code-normalizer service that needs to point to a source
04/23/2026Thu08:59:0212:29:003:29:58Normalizing WHO API postcoordinated codes before sending them to the Lookup Source; attending the weekly team meeting to discuss upcoming showcases, including public OpenMRS sessions and my participation, as well as Sunny’s progress with collections; continuing the process of updating ICD-11 to version 2026-01 across dependent services
04/22/2026Wed17:11:3919:12:362:00:57Atualizado schema do banco de dados utilizando liquibase versionado, inserindo dados dos hosts replica na nova estrutura de banco de dados; atualizado fluxo n8n de backup individual à pedido para utilizar o banco de dados replica; criando backup de teste para Salvaterra (que teve atividade recente nas consultas de backup pelo stakeholder) - sucesso; pendente implementar no fluxo de atualização PEC esse novo acesso ao banco de origem para backup automatizado
04/21/2026Tue09:32:4714:11:314:38:44Updating CIEL Lab and the ICD Agent to use ICD-11 version 2026-01 (https://github.com/OpenConceptLab/ocl_issues/issues/2484); updating the local ICD-11-CIEL-Bridge lookup Source with data from ICD-11 version 2026-01 and CIEL ICD-11 codes
04/20/2026Mon09:08:3211:35:092:26:37.Creating the changelog for the latest ICD-11 version (WHO ICD API 2026-01) to share with Andrew; optimizing the architecture for implementing the CIEL changelog based on OCL data
04/19/2026Sun21:10:5622:12:571:02:01Fixing and improving FR-23 in QA Bulk Validation for CIEL Lab based on Andy’s feedback; recreating the ICD-11-CIEL-Bridge Source locally with the new dataset combining ICD-11 postcoordinated terms and CIEL ICD-11 codes
04/18/2026Sat19:50:0021:51:102:01:10Rebuilding the CIEL Source in local OCL with the last three versions and testing the markdown changelog with better results; running quality checks on the mysqldump generated from OCL
04/17/2026Fri13:53:1816:08:002:14:42Analyzing JSON and SQL versions to build the conversion script from OCL JSON export to an OpenMRS Schema 1.11 mysqldump for the CIEL version https://github.com/OpenConceptLab/ocl_issues/issues/2478
04/17/2026Fri11:13:2912:09:170:55:48Meeting with Burke, Andy, and Jon to discuss how to carry out the release based on what we currently have in the existing release workflow
04/16/2026Thu08:11:0311:21:473:10:44Meeting with Andy, Jon, and Joe to discuss the changelog and the pending demo showcases; aligning on follow-up decisions with Burke for tomorrow’s meeting around export formats and changelog validation points; rerunning indexed ICD-11 postcoordinated codes and reopening https://github.com/OpenConceptLab/ocl_issues/issues/2451 with a report for Andrew’s validation; still needing to generate the report for ICD-11 codes missing from CIEL; refactoring the local CIEL Source to support changelog testing in the correct sequence
04/15/2026Wed13:31:4715:45:552:14:08Loading a new local CIEL version to test deterministic markdown changelog generation; finalizing the code that implements the structure supporting markdown changelog generation without LLM usage for now https://github.com/OpenConceptLab/ocl_issues/issues/2325
04/15/2026Wed07:46:5011:13:503:27:00Fixing hierarchy issues in the OCL uploader script, as well as missing postcoordinated concepts that should be present; documenting the processes and activities required for https://github.com/OpenConceptLab/ocl_issues/milestone/54
04/14/2026Tue14:54:0017:00:002:06:00Completing generation of the 500-diagnosis sample for research; fixing PR https://github.com/OpenConceptLab/oclapi2/pull/852; creating the repository functionality for /orgs/OpenMRS-OCL-Squad/sources/ICD-11-CIEL
04/14/2026Tue07:12:0312:56:525:44:49Defining scope and activities for the next OCL CIEL Release demo showcase; continuing development of a SNOMED-based dataset through an ad hoc script to test Enriched CIEL (Bridge) as the target repo for the Jon + Parvati experiment; raising, fixing, and commenting on these two PRs: https://github.com/OpenConceptLab/oclapi2/pull/849; https://github.com/OpenConceptLab/oclapi2/pull/852; starting analysis for CIEL changelog generation